Small Phylogenetic Trees -- Jukes-Cantor model

Kimura 2 parameter model

Three Taxa (No Molecular Clock)

Neyman 2-state model

Jukes-Cantor model

Jukes-Cantor model

np	nq	D	d	sD	sd	µ	e	M	E	mld
5	5	4	3	2	3	1	3	1	3	23

Maple file
Singular file
Parameterization in probability coordinates
Equivalent classes of probability parameterization
Specialized Fourier transform
Specialized Fourier inverse transform
Parameterization in Fourier coordinates
Equivalent classes of Fourier parameterization
Invariants in Fourier coordinates
Gröbner basis of ideal of invariants

Luis David Garcia, July 31, 2006

Kimura 2 parameter model

Three Taxa (No Molecular Clock)

Neyman 2-state model

Jukes-Cantor model